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ImageArray - A framework for on-disk and in-memory image arrays

ImageArray provides a framework for on-disk and in-memory image arrays, specifically for pyramidal images stored in HDF5, Zarr and life sciences image file formats (OME Bio-Formats).

Last updated

softwarevisualization

7.09 score 6 stars 2 dependents 20 scripts 478 downloads

VoltRon - VoltRon for Spatial Omics Data Integration and Analysis

VoltRon is a spatial omic analysis toolbox for multi-omics integration using spatial image registration. VoltRon is capable of analyzing multiple types and modalities of spatially-aware datasets. VoltRon visualizes and analyzes regions of interests (ROIs), spots, cells, molecules and event tiles.

Last updated

opencvcpp

6.92 score 127 stars 1 dependents 96 scripts

VoltRon - VoltRon for Spatial Omics Data Integration and Analysis

VoltRon is a spatial omic analysis toolbox for multi-omics integration using spatial image registration. VoltRon is capable of analyzing multiple types and modalities of spatially-aware datasets. VoltRon visualizes and analyzes regions of interests (ROIs), spots, cells, molecules and event tiles.

Last updated

opencvcpp

4.68 score 1 dependents 96 scripts

opencv - Bindings to 'OpenCV' Computer Vision Library

Exposes some of the available 'OpenCV' <https://opencv.org/> algorithms, such as a QR code scanner, and edge, body or face detection. These can either be applied to analyze static images, or to filter live video footage from a camera device.

Last updated

opencvcpp

4.17 score 107 scripts 1.4k downloads

HDF5DataFrame - HDF5-backed DataFrame objects and methods

HDF5DataFrame is an R/Bioconductor package for HDF5-backed DataFrame objects and methods. This allows HDF5-backed data to be easily used as data frames with arbitrary sets of columns.

Last updated

datarepresentationinfrastructuresoftware

3.95 score 1 stars 2 dependents 1 scripts

ZarrDataFrame - Bioconductor-friendly Bindings for Zarr

Implements bindings for zarr store that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows Zarr-backed data to be easily used as data frames with arbitrary sets of columns

Last updated

datarepresentationinfrastructuresoftware

2.78 score 2 dependents 1 scripts

VoltRonStore - On-Disk support and dependancies for VoltRon

VoltRonStore provides utilities and a resource for installing dependencies of VoltRon package

Last updated

2.48 score

HDF5DataFrame - HDF5-backed DataFrame objects and methods

Implements bindings for h5 files that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows HDF5-backed data to be easily used as data frames with arbitrary sets of columns.

Last updated

datarepresentationinfrastructuresoftware

2.48 score 2 dependents 1 scripts

VoltRonStore - On-Disk support and dependancies for VoltRon

VoltRonStore provides utilities and a resource for installing dependencies of VoltRon package

Last updated

2.30 score

DandEFA - Dandelion Plot for R-Mode Exploratory Factor Analysis

Contains the function used to create the Dandelion Plot. Dandelion Plot is a visualization method for R-mode Exploratory Factor Analysis.

Last updated

2.04 score 11 scripts 424 downloads

rbcpd - An R package-wrapper for Fast Bayesian Coherent Point Drift and BCPD++ Registration

Native R bindings to a bundled, pinned implementation of Bayesian Coherent Point Drift. The package implements the accelerated BCPD++ workflow in memory: representative-point downsampling, Nystrom low-rank deformation and probability approximations, k-d-tree probability search near convergence, and interpolation of the deformation back to every original moving point.

Last updated

openblascppopenmp

1.70 score