Package: HDF5DataFrame 0.99.1

HDF5DataFrame: HDF5-backed DataFrame objects and methods

Implements bindings for h5 files that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows HDF5-backed data to be easily used as data frames with arbitrary sets of columns.

Authors:Artür Manukyan [aut, cre, fnd]

HDF5DataFrame_0.99.1.tar.gz
HDF5DataFrame_0.99.1.zip(r-4.7)HDF5DataFrame_0.99.1.zip(r-4.6)HDF5DataFrame_0.99.1.zip(r-4.5)
HDF5DataFrame_0.99.1.tgz(r-4.6-any)HDF5DataFrame_0.99.1.tgz(r-4.5-any)
HDF5DataFrame_0.99.1.tar.gz(r-4.7-any)HDF5DataFrame_0.99.1.tar.gz(r-4.6-any)
HDF5DataFrame_0.99.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
HDF5DataFrame/json (API)
NEWS

# Install 'HDF5DataFrame' in R:
install.packages('HDF5DataFrame', repos = c('https://artur-man.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bimsbbioinfo/hdf5dataframe/issues

On CRAN:

Conda:

datarepresentationinfrastructuresoftware

2.48 score 2 packages 1 scripts 11 exports 20 dependencies

Last updated from:4d62ea45c4. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING207
source / vignettesERROR197
linux-release-x86_64WARNING210
macos-release-arm64WARNING164
macos-oldrel-arm64WARNING124
windows-develWARNING151
windows-releaseWARNING163
windows-oldrelWARNING150
wasm-releaseOK102

Exports:DelayedArrayextract_arrayextractCOLSextractROWSHDF5ColumnSeedHDF5ColumnVectorHDF5DataFramepathreplaceCOLSreplaceROWStype

Dependencies:abindBiocGenericsbiocmakeDelayedArraydir.expiryfilelockgenericsh5mreadIRangeslatticeMatrixMatrixGenericsmatrixStatsrhdf5rhdf5filtersRhdf5libS4ArraysS4VectorsSparseArrayXVector

Readme and manuals

Help Manual

Help pageTopics
HDF5ColumnSeedDelayedArray,HDF5ColumnSeed-method dim,HDF5ColumnSeed-method extract_array,HDF5ColumnSeed-method HDF5ColumnSeed HDF5ColumnVector path,HDF5ColumnSeed-method type,HDF5ColumnSeed-method
HDF5ColumnSeed ClassHDF5ColumnSeed-class
HDF5ColumnVector ClassHDF5ColumnVector-class
HDF5-backed DataFrameas.data.frame,HDF5DataFrame-method cbind,HDF5DataFrame-method HDF5DataFrame length,HDF5DataFrame-method names,HDF5DataFrame-method names<-,HDF5DataFrame,ANY-method names<-,HDF5DataFrame-method nrow,HDF5DataFrame-method path,HDF5DataFrame-method rownames,HDF5DataFrame-method rownames<-,HDF5DataFrame-method [[,HDF5DataFrame,ANY,ANY-method [[,HDF5DataFrame-method [[<-,HDF5DataFrame,ANY,ANY,ANY-method [[<-,HDF5DataFrame-method
HDF5DataFrame ClassHDF5DataFrame-class
subsetting-utilsextractCOLS,HDF5DataFrame,ANY-method extractCOLS,HDF5DataFrame-method extractROWS,HDF5DataFrame,ANY-method replaceCOLS,HDF5DataFrame,ANY-method replaceCOLS,HDF5DataFrame-method replaceROWS,HDF5DataFrame,ANY-method replaceROWS,HDF5DataFrame-method subsetting-utils