{
  "_id": "6a215caccd65a98ecbd2f357",
  "Package": "HDF5DataFrame",
  "Version": "0.99.1",
  "Date": "2025-04-23",
  "Title": "HDF5-backed DataFrame objects and methods",
  "Description": "Implements bindings for h5 files that are compatible with\nBioconductor S4 data structures, namely the DataFrame and\nDelayedArray. This allows HDF5-backed data to be easily used as\ndata frames with arbitrary sets of columns.",
  "Authors@R": "person(\"Artür\", \"Manukyan\",\nrole=c(\"aut\", \"cre\", \"fnd\"),\nemail=\"artur-man@hotmail.com\",\ncomment=c(ORCID=\"0000-0002-0441-9517\"))",
  "License": "MIT + file LICENSE",
  "biocViews": "DataRepresentation, Infrastructure, Software",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "URL": "https://github.com/BIMSBbioinfo/HDF5DataFrame",
  "BugReports": "https://github.com/BIMSBbioinfo/HDF5DataFrame/issues",
  "Config/pak/sysreqs": "libssl-dev zlib1g-dev",
  "Repository": "https://artur-man.r-universe.dev",
  "Date/Publication": "2025-09-20 13:51:25 UTC",
  "RemoteUrl": "https://github.com/Artur-man/HDF5DataFrame",
  "RemoteRef": "HEAD",
  "RemoteSha": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 11:04:19 UTC",
    "User": "root"
  },
  "Author": "Artür Manukyan [aut, cre, fnd] (ORCID:\n<https://orcid.org/0000-0002-0441-9517>)",
  "Maintainer": "Artür Manukyan <artur-man@hotmail.com>",
  "MD5sum": "9cbe7ac0a49ad9497fb5600518c0af53",
  "_user": "artur-man",
  "_type": "src",
  "_file": "HDF5DataFrame_0.99.1.tar.gz",
  "_fileid": "1f41c2017275864d53da156cf8e17d9cb283b8c19d34e92e2359f74ba53fea9e",
  "_filesize": 105868,
  "_sha256": "1f41c2017275864d53da156cf8e17d9cb283b8c19d34e92e2359f74ba53fea9e",
  "_created": "2026-06-04T11:04:19.000Z",
  "_published": "2026-06-04T11:08:28.300Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79505145173,
      "time": 207,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7409852153"
    },
    {
      "job": 79505145172,
      "time": 210,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7409853276"
    },
    {
      "job": 79505145184,
      "time": 124,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7409827170"
    },
    {
      "job": 79505145185,
      "time": 164,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7409839216"
    },
    {
      "job": 79504628199,
      "time": 197,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7409788922"
    },
    {
      "job": 79505145198,
      "time": 102,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7409821191"
    },
    {
      "job": 79505145180,
      "time": 151,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7409835460"
    },
    {
      "job": 79505145182,
      "time": 150,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7409835156"
    },
    {
      "job": 79505145162,
      "time": 163,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7409838845"
    }
  ],
  "_buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/Artur-man/HDF5DataFrame",
  "_commit": {
    "id": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
    "author": "Artur-man <artur-man@hotmail.com>",
    "committer": "Artur-man <artur-man@hotmail.com>",
    "message": "update vignette and README\n",
    "time": 1758376285
  },
  "_maintainer": {
    "name": "Artür Manukyan",
    "email": "artur-man@hotmail.com",
    "login": "artur-man",
    "description": "Bioinformatics Scientist at MDC BIMSB\n",
    "uuid": 39335576,
    "orcid": "0000-0002-0441-9517"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5.0",
      "role": "Depends"
    },
    {
      "package": "DelayedArray",
      "role": "Depends"
    },
    {
      "package": "S4Vectors",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "h5mread",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "HDF5Array",
      "role": "Suggests"
    },
    {
      "package": "rhdf5",
      "role": "Suggests"
    }
  ],
  "_owner": "artur-man",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-38",
      "n": 3
    }
  ],
  "_tags": [],
  "_topics": [
    "datarepresentation",
    "infrastructure",
    "software"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "artur-man",
      "count": 16,
      "uuid": 39335576
    }
  ],
  "_userbio": {
    "uuid": 39335576,
    "type": "user",
    "name": "Artür Manukyan ",
    "description": "Bioinformatics Scientist at MDC BIMSB\r\n"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/HDF5DataFrame"
  },
  "_devurl": "https://github.com/bimsbbioinfo/hdf5dataframe",
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/HDF5DataFrame.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "DelayedArray",
    "extract_array",
    "extractCOLS",
    "extractROWS",
    "HDF5ColumnSeed",
    "HDF5ColumnVector",
    "HDF5DataFrame",
    "path",
    "replaceCOLS",
    "replaceROWS",
    "type"
  ],
  "_help": [
    {
      "page": "HDF5ColumnSeed",
      "title": "HDF5ColumnSeed",
      "topics": [
        "DelayedArray,HDF5ColumnSeed-method",
        "dim,HDF5ColumnSeed-method",
        "extract_array,HDF5ColumnSeed-method",
        "HDF5ColumnSeed",
        "HDF5ColumnVector",
        "path,HDF5ColumnSeed-method",
        "type,HDF5ColumnSeed-method"
      ]
    },
    {
      "page": "HDF5ColumnSeed-class",
      "title": "HDF5ColumnSeed Class",
      "topics": [
        "HDF5ColumnSeed-class"
      ]
    },
    {
      "page": "HDF5ColumnVector-class",
      "title": "HDF5ColumnVector Class",
      "topics": [
        "HDF5ColumnVector-class"
      ]
    },
    {
      "page": "HDF5DataFrame",
      "title": "HDF5-backed DataFrame",
      "topics": [
        "as.data.frame,HDF5DataFrame-method",
        "cbind,HDF5DataFrame-method",
        "HDF5DataFrame",
        "length,HDF5DataFrame-method",
        "names,HDF5DataFrame-method",
        "names<-,HDF5DataFrame,ANY-method",
        "names<-,HDF5DataFrame-method",
        "nrow,HDF5DataFrame-method",
        "path,HDF5DataFrame-method",
        "rownames,HDF5DataFrame-method",
        "rownames<-,HDF5DataFrame-method",
        "[[,HDF5DataFrame,ANY,ANY-method",
        "[[,HDF5DataFrame-method",
        "[[<-,HDF5DataFrame,ANY,ANY,ANY-method",
        "[[<-,HDF5DataFrame-method"
      ]
    },
    {
      "page": "HDF5DataFrame-class",
      "title": "HDF5DataFrame Class",
      "topics": [
        "HDF5DataFrame-class"
      ]
    },
    {
      "page": "subsetting-utils",
      "title": "subsetting-utils",
      "topics": [
        "extractCOLS,HDF5DataFrame,ANY-method",
        "extractCOLS,HDF5DataFrame-method",
        "extractROWS,HDF5DataFrame,ANY-method",
        "replaceCOLS,HDF5DataFrame,ANY-method",
        "replaceCOLS,HDF5DataFrame-method",
        "replaceROWS,HDF5DataFrame,ANY-method",
        "replaceROWS,HDF5DataFrame-method",
        "subsetting-utils"
      ]
    }
  ],
  "_readme": "https://github.com/Artur-man/HDF5DataFrame/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "BiocGenerics",
    "biocmake",
    "DelayedArray",
    "dir.expiry",
    "filelock",
    "generics",
    "h5mread",
    "IRanges",
    "lattice",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "rhdf5",
    "rhdf5filters",
    "Rhdf5lib",
    "S4Arrays",
    "S4Vectors",
    "SparseArray",
    "XVector"
  ],
  "_score": 2.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "hdf5dataframe",
  "_universes": [
    "artur-man",
    "bimsbbioinfo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.1",
      "date": "2026-06-04T11:06:37.000Z",
      "distro": "noble",
      "commit": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
      "fileid": "0f64e05b9b2e0cd448610131ee6ea57f51f6f953dd53c3e57a7a51baaa9eb04c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.99.1",
      "date": "2026-06-04T11:06:38.000Z",
      "distro": "noble",
      "commit": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
      "fileid": "cccb4efa98dab22a1ea0b289989aebb8d06e24331d1d9bbb804a3ae4363cb2aa",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.1",
      "date": "2026-06-04T11:05:52.000Z",
      "commit": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
      "fileid": "13667b52ad070746028869a4678a2e206656acf55549dbffe9c9d774f5d30490",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.99.1",
      "date": "2026-06-04T11:06:10.000Z",
      "commit": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
      "fileid": "18c22e5537e3d2e820238b214ba24527c3c874299d6e59bdeda0e211ed79ee81",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.1",
      "date": "2026-06-04T11:06:25.000Z",
      "commit": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
      "fileid": "ddac82f73d1765843769ac28989a0c38dfe2368d11548c2333184373c0529b88",
      "status": "success",
      "buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.1",
      "date": "2026-06-04T11:05:37.000Z",
      "commit": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
      "fileid": "881d64ed78ee5831a6a1ab12b9ae2f2945b3041775fb98e4b818bdff79a5bd28",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.1",
      "date": "2026-06-04T11:05:35.000Z",
      "commit": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
      "fileid": "dacf16fe9550939daa97b64efcf147eb44d349f8d458dd2ba2c47e945f6ebb25",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.99.1",
      "date": "2026-06-04T11:05:50.000Z",
      "commit": "4d62ea45c480d31acbf6d16018858c112f9edb8d",
      "fileid": "6b121b6ab61b241fb6381fbbfcc1e9dfe2f8968c4bc498dd67b44fd8aea3eb13",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/artur-man/actions/runs/26947657959"
    }
  ]
}